top of page

What Are Aptamers Teacher Resource.

If preferred the student activity word document can be download to the right. Click onto the student activity document link to download.

Activity 2 Student Version

Activity 2 Teacher Resource

To the left is the teacher resource, containing some general background information and suggested solutions.

What are Aptamers Teacher Resource.

Curriculum

Aims

By the end of this activity the students should be able to:

  • Know what aptamers are and articulate their basic properties.

  • Demonstrate how an aptamer can bind to a specific receptor.

Background Information

Aptamers can be made up from peptide chains  or out of nucleic acids (DNA and RNA bases: adenine, guanine, thymine and cytosine and uracil) made into short chains of nucleotides called oligonucleotides . For this activity the focus is on nucleic acid aptamers.

 

Aptamers are being researched and developed to be used as nanomedicine for cancer treatment as they can act like antibodies and can bind with specificity to receptors. The DNA within the aptamer isn’t binding with DNA on the cell receptor, but instead forming bonds between the binding site of the aptamer which folds into a 3D structure and the molecules on the receptor .

 

These bonds can be quite strong depending on the kind of 3D structure the aptamer forms and the kind of receptor on the cell.  If these receptors are specific to a cancer cell type this has the potential to create targeted cancer treatment.

 

Nucleic acids have a diameter of 2.5 nanometres so aptamers are a form of nanotechnology. Because they are nano sized they can get into various tightly packed cell masses much more easily than larger molecules such as antibodies, making them great at targeting tumour masses .

 

Because aptamers resemble the same material we have in our cells and the nucleus, they have low immunogenicity- ability of a substance to set off a defensive immune system reaction in the body , this makes them preferable to using antibodies to direct cancer cell targeting as antibody use has a greater potential to set off an immune system reaction.

Aptamers can go by other names such as ligands which are molecules that bind to a metal ion  or chemical antibodies because they are chemically made versions of antibodies.

Aptamer’s are a relatively new technology, only discovered in the 1990’s. This was a chance observation by scientists who were working with HIV viruses, noticing small segments of a RNA that would attach to some proteins strongly . This was of interest and so further research into the use of small single stranded DNA or RNA has been investigated; to this current day it has great theoretical potential use to create targeted cancer cell treatment .

 

The reason why this isn’t currently used clinically in cancer treatment is because it is a relatively new technology and as a result, still has to go through many tests and laboratory and clinical trials before it is allowed to become a clinical treatment which takes many years to complete .  Nucleic acids can also be easily made into 3D shapes as they can bend and fold into shapes, like origami, so they can also form capsules . These can be an incredibly useful tool when utilised for nanomedicine to treat cancer  as a drug can be housed inside the capsule until the capsule degrades, releasing the drug inside the target cell.

1

2

3

4

5

6

7

8

9

10

11

Student Activity

The student questions are to be answered by using the abstract of an actual scientific journal article. Explain to the students what a scientific journal article is and what the purpose of an abstract is before they read it to answer the questions.

The definitions can be found by reading the student introduction at the start of the student worksheet and enable the students to understand some of the words in the abstract to answer the questions.

Blue is expected student answer, red is extra background/ content for the teacher.

Student Activity Sheet Answers

What does an aptamer complex look like?

The students should be doing two sketches.

 

In the first sketch there should be an aptamer (labelled aptamer) attached to a linker (labelled linker) attached to the drug (labelled chemotherapy drug).

This is based of video 1: https://www.youtube.com/watch?v=GdIYUH_lRSk . Watch from the start up until 2 minutes and 8 seconds in.

 

In the second video it needs to be made clear to the students that the antibodies embedded in the nano capsule could just as easily be aptamers embedded into the capsule as aptamers (due to their nucleic acid nature are easily synthesised and chemically altered to bind with other molecules).

The link to the second video is: https://www.youtube.com/watch?v=1QwyMWM0Jjg . Watch the clip up until 1minute and 8 seconds:

 

Remind the students again that in their sketch of this kind of nanotechnology that they should be sketching a nano-capsule with aptamers embedded in its structure, not antibodies and label as nano-capsule and aptamer with a label pointing to the chemotherapy drugs inside the capsule.

Bringing It all together section.

To round up this activity, the students will be modelling aptamers and receptors to show how they bind together.

 

To keep this simple the main things that the students need to show the teacher is that their aptamer has a complementary shaped pattern to the receptor they have made to show that they fit together specifically and not to any random receptor.

 

This has two purposes. To demonstrate that aptamers can be designed to target specific receptors, but also that cancer cells/ a lot of cells have different types of receptors on their surfaces. Introduce to the students to the lock and key concept when describing how aptamers bind to the receptor with specificity and high affinity.

 

Have a quick discussion with them to make sure they understand it’s not DNA binding to DNA, instead the DNA aptamer forms a 3D shape which has a portion of it that can bind to the molecules in the receptor which is not made from DNA.

Before the students make their pipe cleaner examples, get them to sketch their concept and explain it to the teacher; so that it is known that they have the right ideas about how this nanotechnology works.

There is a demonstration video below that shows an example of a pipe cleaner aptamer complex and pipe cleaner nanoparticle complex, highlighting what they need to show and demonstrate with their models.

Aptamer Modeling Video Example

Aptamer Modeling Video: created and filmed by Hayley Wilson on the 6/9/2018.

References:

1. Bourghouts, C. Kunz, C & Groner, B., 2005, ‘Peptide aptamers: recent developments for cancer therapy.’,  EXPERT OPINION ON BIOLOGICAL THERAPY, 5(6), 783-797

 

2. Shigdar, S, Luczo, J, Wei, M, Bell, R, Danks, A, Liu, K, & Wei, D 2010, ‘Aptamer Therapeutics: The 21St Century's Magic Bullet Of Nanomedicine’, n.p.: Bentham Science Publishers, Deakin Research Online, EBSCOhost, viewed 28 August 2018

 

3. Kher, G., Trehan, S. & Misra, A., 2011, ‘7 - Antisense Oligonucleotides and RNA Interference’, Challenges in Delivery of Therapeutic Genomics and Proteomics, edited by Kher, A., pp. 325 – 386., viewed 1/10/2018, https://www.sciencedirect.com/science/article/pii/B9780123849649000074

 

4. Xiang, D, Tran, PH, Shigdar, S, Duan, W, Zheng, C, Zhou, S-F, Qiao, S, Pu, C, Li, Y, Kong, L, Kouzani, AZ, Lin, J, Liu, K & Li, L, 2015., ‘Superior performance of aptamer in tumor penetration over antibody: Implication of aptamer-based theranostics in solid tumors’, Theranostics, vol. 5, no. 10, pp. 1083–1097, viewed 21 September 2018, <http://ezproxy.deakin.edu.au/login?url=http://search.ebscohost.com/login.aspx?direct=true&db=edselc&AN=edselc.2-52.0-84945928635&authtype=sso&custid=deakin&site=eds-live&scope=site>.

 

5. immunogenicity. (n.d.) Miller-Keane Encyclopedia and Dictionary of Medicine, Nursing, and Allied Health, Seventh Edition. (2003). Retrieved September 5 2018 from https://medical-dictionary.thefreedictionary.com/immunogenicity

6. Chemistry Libretexts, 2018, “Ligands”, https://chem.libretexts.org/Textbook_Maps/Inorganic_Chemistry/Supplemental_Modules_(Inorganic_Chemistry)/Coordination_Chemistry/Properties_of_Coordination_Compounds/Ligands retrieved: 6/9/2018.

7. Dollins, C.M., Nair, S. & Sullenger, B.A., 2008, ‘Aptamers in immunotherapy.’ Hum. Gene. Ther, 19, 443–450. [Google Scholar]

                            

8. Henri, J, Macdonald, J, Strom, M, Duan, W, & Shigdar, S 2018, ‘Aptamers As Potential Therapeutic Agents For Ovarian Cancer’, Biochimie: Elsevier, Deakin Research Online, EBSCOhost, viewed 28 August 2018.

 

9. Lakhin, AV, Tarantul, VZ & Gening, LV., 2013, ‘Aptamers: Problems, solutions and prospects’, Acta Naturae, vol. 5, no. 19, pp. 34–43, viewed 21 September 2018, http://ezproxy.deakin.edu.au/login?url=http://search.ebscohost.com/login.aspx?direct=true&db=edselc&AN=edselc.2-52.0-84893403910&authtype=sso&custid=deakin&site=eds-live&scope=site

 

10. Xiang, D., Shigdar, S., Qiao, G., Wang, T., Kouzani, A. Z., Zhou, S.-F., Kong, L., Li, Y., Pu, C.,  Duan, W., 2015, ‘Nucleic Acid Aptamer-Guided Cancer Therapeutics and Diagnostics: the Next Generation of Cancer Medicine.’ Theranostics, Vol. 5, Iss. 1, pp. 23–42. http://doi.org/10.7150/thno.10202

 

11. Ozalp, V, Oktem, H, & Eyidogan, F 2011, 'Aptamer-gated nanoparticles for smart drug delivery', Pharmaceuticals, vol. 4, no. 8, p. 1137-1157. Available from: 10.3390/ph4081137. [28 August 2018]

 

12. Zhou, J, & Rossi, J 2017, 'Aptamers as targeted therapeutics: current potential and challenges', Nature Reviews Drug Discovery, no. 6, p. 440. Available from: 10.1038/nrd.2017.86. [5 September 2018

 

13. Hernandez, FJ, Hernandez, LI, Pinto, A, Schäfer, T & Özalp, VC, 2013., ‘Targeting cancer cells with controlled release nanocapsules based on a single aptamer’, Chemical Communications, vol. 49, no. 13, pp. 1285–1287, viewed 30 September 2018, <http://ezproxy.deakin.edu.au/login?url=http://search.ebscohost.com/login.aspx?direct=true&db=edselc&AN=edselc.2-52.0-84872583189&authtype=sso&custid=deakin&site=eds-live&scope=site>.

bottom of page